read_ecotaxa_tsv.RdRead tsv file from EcoTaxa
read_ecotaxa_tsv(file, col_types = "auto", ...) read_etx(file, col_types = "auto", ...)
| file | path to the tsv file. |
|---|---|
| col_types | a column specification for |
| ... | passed to |
#> Rows: 99 #> Columns: 160 #> $ object_id <chr> "tara_oceans_polar_circle_2013_200_… #> $ object_lat <dbl> 71.98317, 73.16502, 79.06295, 73.16… #> $ object_lon <dbl> -93.549683, -85.034117, 74.198950, … #> $ object_date <date> 2013-09-27, 2013-10-03, 2013-08-12… #> $ object_time <time> 22:17:00, 19:10:00, 11:05:00, 19:1… #> $ object_link <lgl> NA, NA, NA, NA, NA, NA, NA, NA, NA,… #> $ object_depth_min <dbl> 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,… #> $ object_depth_max <dbl> 114.0, 112.0, 99.4, 112.0, 112.0, 1… #> $ object_annotation_category <chr> "Calanidae", "Calanidae", "Calanida… #> $ object_annotation_status <chr> "validated", "validated", "validate… #> $ object_annotation_parent_category <chr> "Calanoida", "Calanoida", "Calanoid… #> $ object_annotation_hierarchy <chr> "living>Eukaryota>Opisthokonta>Holo… #> $ object_annotation_person_name <chr> "Manoela Brandao", "Manoela Brandao… #> $ object_annotation_person_email <chr> "manoelacb@obs-vlfr.fr", "manoelacb… #> $ object_annotation_date <date> 2017-06-09, 2017-06-09, 2017-06-09… #> $ object_annotation_time <time> 15:38:20, 15:38:20, 15:38:20, 15:3… #> $ img_file_name <chr> "tara_oceans_polar_circle_2013_200_… #> $ object_histcum1 <dbl> 72, 80, 121, 172, 81, 80, 100, 64, … #> $ object_lon_end <lgl> NA, NA, NA, NA, NA, NA, NA, NA, NA,… #> $ object_histcum2 <dbl> 90, 98, 148, 196, 101, 108, 125, 84… #> $ object_symetriehc <dbl> 4, 4, 4, 3, 4, 4, 3, 5, 3, 4, 4, 3,… #> $ object__area <dbl> 0.08, 2.04, 0.72, 10.41, 0.10, 0.19… #> $ object_xstart <dbl> 8587, 16113, 4780, 9511, 10882, 127… #> $ object_sr <dbl> 26.86567, 25.35885, 26.54321, 20.85… #> $ object_by <dbl> 11319, 10721, 1437, 10056, 9915, 11… #> $ object_ymg5 <dbl> 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,… #> $ object_slope <dbl> 3.329, 2.709, 2.254, 2.404, 2.397, … #> $ object_compm2 <dbl> 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,… #> $ object_perimareaexc <dbl> 0.04007485, 0.03439721, 0.05533616,… #> $ object_mean <dbl> 113.10, 120.10, 158.48, 199.79, 126… #> $ object_fcons <dbl> 74.590, 110.454, 141.718, 177.577, … #> $ object_mode <dbl> 60, 91, 124, 254, 80, 72, 112, 66, … #> $ object_nb3 <dbl> 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,… #> $ object_compm3 <dbl> 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,… #> $ object_thickr <dbl> 2.197, 6.069, 4.187, 2.892, 5.047, … #> $ object_xmg5 <dbl> 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,… #> $ object_ym <dbl> 193.83, 82.37, 220.39, 121.96, 221.… #> $ object_lat_end <lgl> NA, NA, NA, NA, NA, NA, NA, NA, NA,… #> $ object_major <dbl> 450.8, 407.0, 357.7, 329.8, 344.4, … #> $ object_perimmajor <dbl> 4.891353, 4.054054, 6.458101, 5.781… #> $ object_esd <dbl> 35070, 31172, 26792, 27120, 25866, … #> $ object_feret <dbl> 521.2, 429.5, 418.0, 418.6, 433.9, … #> $ object_nb2 <dbl> 7, 6, 5, 17, 3, 2, 6, 1, 2, 2, 1, 1… #> $ object_compmean <dbl> 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,… #> $ object_compentropy <dbl> 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,… #> $ object_compm1 <dbl> 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,… #> $ object_histcum3 <dbl> 140, 144, 186, 218, 169, 182, 172, … #> $ object_area <dbl> 55089, 48967, 42085, 42603, 40632, … #> $ object_elongation <dbl> 2.891026, 2.660131, 2.386667, 2.000… #> $ object_width <dbl> 352, 427, 168, 389, 248, 366, 207, … #> $ object_x <dbl> 196.97, 231.16, 76.33, 220.83, 132.… #> $ object_fractal <dbl> 1.198, 1.215, 1.275, 1.298, 1.180, … #> $ object_min <dbl> 48, 46, 89, 92, 51, 49, 58, 44, 52,… #> $ object_circex <dbl> 313.85708, 365.77441, 226.89522, 25… #> $ object_tag <dbl> 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,… #> $ object_meanpos <dbl> -2.0875576, -1.8205128, -1.3316062,… #> $ object_centroids <dbl> 11, -20, -4, -1, -17, 24, 19, 11, -… #> $ object_skew <dbl> 1.077, 1.020, 0.536, -0.368, 0.724,… #> $ object_minor <dbl> 155.6, 153.2, 149.8, 164.5, 150.2, … #> $ object_perimferet <dbl> 4.234165, 3.837209, 5.531100, 4.553… #> $ object_perim. <dbl> 2205.92, 1649.60, 2311.73, 1907.67,… #> $ object_convarea <dbl> 74427, 58049, 58176, 59408, 73159, … #> $ object_height <dbl> 426, 176, 411, 230, 426, 391, 385, … #> $ object_angle <dbl> 52.0, 172.6, 92.6, 154.4, 106.7, 71… #> $ object_symetrievc <dbl> 3, 4, 4, 2, 4, 4, 3, 5, 3, 4, 4, 3,… #> $ object_skelarea <dbl> 2734, 1597, 2973, 2208, 1699, 2342,… #> $ object_compslope <dbl> 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,… #> $ object_symetrieh <dbl> 3.812, 2.996, 3.127, 3.209, 4.056, … #> $ object_ystart <dbl> 11319, 10721, 1437, 10056, 9915, 11… #> $ object_range <dbl> 201, 209, 162, 163, 200, 202, 196, … #> $ object_median <dbl> 91, 99, 149, 202, 102, 109, 129, 88… #> $ object_symetriev <dbl> 3.821, 3.010, 3.179, 3.104, 4.013, … #> $ object_xm <dbl> 189.15, 220.34, 81.23, 218.11, 135.… #> $ object_feretareaexc <dbl> 0.009464639, 0.008964123, 0.0100045… #> $ object_convperim <dbl> 1552, 1202, 1154, 1234, 1344, 1510,… #> $ object_max <dbl> 249, 255, 251, 255, 251, 251, 254, … #> $ object_nb1 <dbl> 5, 7, 6, 18, 7, 7, 4, 10, 7, 1, 2, … #> $ object_cdexc <dbl> 1.998292e-04, -4.169359e-04, -9.573… #> $ object_stddev <dbl> 53.605, 53.443, 43.101, 34.061, 54.… #> $ object_area_exc <dbl> 55047, 47969, 41781, 38170, 40591, … #> $ object_kurt <dbl> -0.004, -0.103, -0.892, -0.482, -0.… #> $ object_intden <dbl> 6230392, 5880810, 6669429, 8511689,… #> $ object_circ. <dbl> 0.142, 0.226, 0.099, 0.147, 0.116, … #> $ object_y <dbl> 175.21, 91.44, 228.59, 119.70, 240.… #> $ object_bx <dbl> 8287, 15799, 4632, 9499, 10646, 126… #> $ object_cv <dbl> 47.745358, 44.129892, 27.132761, 17… #> $ sample_id <chr> "tara_oceans_polar_circle_2013_200_… #> $ sample_dataportal_descriptor <chr> "<bioimagingdescriptors><bioimaging… #> $ sample_depth_qc <dbl> 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,… #> $ sample_nb_jar <dbl> 9999, 9999, 9999, 9999, 9999, 9999,… #> $ sample_other_ref <chr> "l52", "l52", "l51", "l52", "l52", … #> $ sample_open <lgl> NA, NA, NA, NA, NA, NA, NA, NA, NA,… #> $ sample_scan_operator <chr> "natalia_llopis", "natalia_llopis",… #> $ sample_net_mesh <dbl> 200, 200, 200, 200, 200, 200, 200, … #> $ sample_barcode <chr> "p100003475", "r110000756", "p10000… #> $ sample_net_type <chr> "wp2", "wp2", "wp2", "wp2", "wp2", … #> $ sample_ship_speed <dbl> 9999, 9999, 9999, 9999, 9999, 9999,… #> $ sample_tot_vol_qc <dbl> 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,… #> $ sample_tow_type <dbl> 1, 1, 1, 1, 1, 1, 1, 3, 1, 3, 1, 3,… #> $ sample_ctdrosettefilename <chr> "ctdref", "ctdref", "ctdref", "ctdr… #> $ sample_bottomdepth <dbl> 129, 315, 383, 315, 315, 315, 315, … #> $ sample_tow_nb <dbl> 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,… #> $ sample_zmin <dbl> 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,… #> $ sample_zmax <dbl> 114.0, 112.0, 99.4, 112.0, 112.0, 1… #> $ sample_program <chr> "tara_oceans_polar_circle", "tara_o… #> $ sample_tot_vol <dbl> 21, 163, 88, 163, 163, 163, 163, 58… #> $ sample_ship <chr> "tara", "tara", "tara", "tara", "ta… #> $ sample_cable_angle <dbl> 9999, 9999, 9999, 9999, 9999, 9999,… #> $ sample_cable_speed <dbl> 9999, 9999, 9999, 9999, 9999, 9999,… #> $ sample_comment <chr> "no", "no", "no", "no", "no", "no",… #> $ sample_stationid <dbl> 200, 202, 186, 202, 202, 202, 202, … #> $ sample_sample_qc <dbl> 1211, 1211, 1223, 1211, 1211, 1211,… #> $ sample_duration <dbl> 9999, 9999, 9999, 9999, 9999, 9999,… #> $ sample_cable_length <dbl> 9999, 9999, 9999, 9999, 9999, 9999,… #> $ sample_net_surf <dbl> 0.2485, 0.2485, 0.2485, 0.2485, 0.2… #> $ process_id <chr> "zooprocess_tara_oceans_polar_circl… #> $ process_particle_bw_ratio <lgl> NA, NA, NA, NA, NA, NA, NA, NA, NA,… #> $ process_time <chr> "101900", "113500", "114000", "1135… #> $ process_img_software_version <chr> "7.03_picheral_cnrs", "7.03_pichera… #> $ process_date <dbl> 20140723, 20140724, 20140721, 20140… #> $ process_particle_min_size_mm <dbl> 0.3, 0.3, 0.3, 0.3, 0.3, 0.3, 0.3, … #> $ process_particle_pixel_size_mm <dbl> 0.0106, 0.0106, 0.0106, 0.0106, 0.0… #> $ process_img_background_img <chr> "20140722_1358_background_large_man… #> $ process_particle_threshold <dbl> 243, 243, 243, 243, 243, 243, 243, … #> $ process_img_od_std <dbl> 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,… #> $ process_img_od_grey <lgl> NA, NA, NA, NA, NA, NA, NA, NA, NA,… #> $ process_img_resolution <dbl> 2400, 2400, 2400, 2400, 2400, 2400,… #> $ process_particle_sep_mask <chr> "include", "include", "include", "i… #> $ process_particle_version <chr> "6.15_2009/10/25_picheral_cnrs", "6… #> $ process_software <chr> "zooprocess_pid_to_ecotaxa_7.24_201… #> $ process_particle_max_size_mm <dbl> 100, 100, 100, 100, 100, 100, 100, … #> $ acq_id <chr> "d1_tara_oceans_polar_circle_2013_2… #> $ acq_instrument <chr> "zooscan", "zooscan", "zooscan", "z… #> $ acq_ysize <dbl> 51720, 51720, 51720, 51720, 51720, … #> $ acq_lut_ratio <dbl> 1.15, 1.15, 1.15, 1.15, 1.15, 1.15,… #> $ acq_author <chr> "natalia_llopis", "natalia_llopis",… #> $ acq_lut_16b_median <dbl> 43842.55, 42364.50, 41778.00, 42364… #> $ acq_min_mesh <dbl> 1000, 1000, 100, 1000, 1000, 1000, … #> $ acq_quality <lgl> NA, NA, NA, NA, NA, NA, NA, NA, NA,… #> $ acq_yoffset <dbl> 1966, 1966, 1966, 1966, 1966, 1966,… #> $ acq_scan_time <dbl> 154400, 144400, 115300, 144400, 144… #> $ acq_lut_filter <chr> "no", "no", "no", "no", "no", "no",… #> $ acq_xsize <dbl> 29048, 29048, 29048, 29048, 29048, … #> $ acq_scan_date <dbl> 20140722, 20140723, 20140717, 20140… #> $ acq_software <chr> "vuescan9.0.51", "vuescan9.0.51", "… #> $ acq_hardware <chr> "hydroptic_v3_window7", "hydroptic_… #> $ acq_imgtype <chr> "zooscan", "zooscan", "zooscan", "z… #> $ acq_scan_resolution <dbl> 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3,… #> $ acq_greyfrom <dbl> 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2,… #> $ acq_sub_part <dbl> 16, 32, 128, 32, 32, 32, 32, 4, 32,… #> $ acq_rotation <dbl> 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3,… #> $ acq_max_mesh <dbl> 999999, 999999, 999999, 999999, 999… #> $ acq_lut_max <dbl> 50418, 48719, 48044, 48719, 48719, … #> $ acq_lut_odrange <dbl> 1.8, 1.8, 1.8, 1.8, 1.8, 1.8, 1.8, … #> $ acq_miror <dbl> 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,… #> $ acq_sub_method <chr> "motoda", "motoda", "motoda", "moto… #> $ acq_xoffset <dbl> 5766, 5766, 5766, 5766, 5766, 5766,… #> $ acq_lut_color_balance <chr> "manual", "manual", "manual", "manu… #> $ acq_lut_min <dbl> 604, 583, 575, 583, 583, 583, 583, … #> $ acq_bitpixel <dbl> 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3,…#> Warning: The following named parsers don't match the column names: object_annotation_date, object_annotation_timeglimpse(d)#> Rows: 98 #> Columns: 153 #> $ img_file_name <chr> "tara_med_20140607_n_manta_016_micropl… #> $ img_rank <dbl> 0, 1, 0, 1, 0, 1, 0, 1, 0, 1, 0, 1, 0,… #> $ object_id <chr> "tara_med_20140607_n_manta_016_micropl… #> $ object_link <chr> "http://www.zooscan.obs-vlfr.fr//", "h… #> $ object_lat <dbl> 43.6536, 43.6536, 43.6536, 43.6536, 43… #> $ object_lon <dbl> 7.7716, 7.7716, 7.7716, 7.7716, 7.7716… #> $ object_date <date> 2014-06-07, 2014-06-07, 2014-06-07, 2… #> $ object_time <time> 23:25:00, 23:25:00, 23:25:00, 23:25:0… #> $ object_depth_min <dbl> 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,… #> $ object_depth_max <dbl> 0.16, 0.16, 0.16, 0.16, 0.16, 0.16, 0.… #> $ object_lat_end <dbl> 43.61333, 43.61333, 43.61333, 43.61333… #> $ object_lon_end <dbl> 7.7151, 7.7151, 7.7151, 7.7151, 7.7151… #> $ object_area <dbl> 710, 710, 661, 661, 1022, 1022, 10626,… #> $ object_mean <dbl> 237.54, 237.54, 236.40, 236.40, 238.76… #> $ object_stddev <dbl> 5.294, 5.294, 6.383, 6.383, 6.554, 6.5… #> $ object_mode <dbl> 240, 240, 241, 241, 242, 242, 58, 58, … #> $ object_min <dbl> 213, 213, 213, 213, 211, 211, 43, 43, … #> $ object_max <dbl> 251, 251, 253, 253, 254, 254, 244, 244… #> $ object_x <dbl> 33.12, 33.12, 24.00, 24.00, 37.46, 37.… #> $ object_y <dbl> 15.63, 15.63, 16.97, 16.97, 16.52, 16.… #> $ object_xm <dbl> 33.02, 33.02, 24.05, 24.05, 37.39, 37.… #> $ object_ym <dbl> 15.66, 15.66, 16.99, 16.99, 16.56, 16.… #> $ object_perim. <dbl> 267.26, 267.26, 295.06, 295.06, 258.78… #> $ object_bx <dbl> 9797, 9797, 10107, 10107, 9936, 9936, … #> $ object_by <dbl> 325, 325, 359, 359, 539, 539, 1153, 11… #> $ object_width <dbl> 62, 62, 43, 43, 65, 65, 136, 136, 129,… #> $ object_height <dbl> 36, 36, 37, 37, 35, 35, 190, 190, 186,… #> $ object_major <dbl> 56.8, 56.8, 35.9, 35.9, 52.0, 52.0, 22… #> $ object_minor <dbl> 15.9, 15.9, 23.4, 23.4, 25.0, 25.0, 59… #> $ object_angle <dbl> 18.4, 18.4, 152.9, 152.9, 163.1, 163.1… #> $ object_circ. <dbl> 0.125, 0.125, 0.095, 0.095, 0.192, 0.1… #> $ object_feret <dbl> 63.8, 63.8, 48.9, 48.9, 67.4, 67.4, 21… #> $ object_intden <dbl> 168650, 168650, 156261, 156261, 244008… #> $ object_median <dbl> 239, 239, 238, 238, 240, 240, 66, 66, … #> $ object_skew <dbl> -1.403, -1.403, -0.640, -0.640, -1.248… #> $ object_kurt <dbl> 2.769, 2.769, 0.320, 0.320, 2.427, 2.4… #> $ `object_%area` <dbl> 4.65, 4.65, 6.51, 6.51, 17.91, 17.91, … #> $ object_xstart <dbl> 9840, 9840, 10118, 10118, 9975, 9975, … #> $ object_ystart <dbl> 325, 325, 359, 359, 539, 539, 1153, 11… #> $ object_area_exc <dbl> 677, 677, 618, 618, 839, 839, 10625, 1… #> $ object_fractal <dbl> 1.193, 1.193, 1.230, 1.230, 1.273, 1.2… #> $ object_skelarea <dbl> 205, 205, 213, 213, 301, 301, 427, 427… #> $ object_slope <dbl> 0.155, 0.155, 0.123, 0.123, 0.193, 0.1… #> $ object_histcum1 <dbl> 234, 234, 231, 231, 234, 234, 58, 58, … #> $ object_histcum2 <dbl> 237, 237, 236, 236, 238, 238, 65, 65, … #> $ object_histcum3 <dbl> 240, 240, 240, 240, 240, 240, 87, 87, … #> $ object_xmg5 <dbl> 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,… #> $ object_ymg5 <dbl> 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,… #> $ object_nb1 <dbl> 0, 0, 0, 0, 2, 2, 12, 12, 9, 9, 2295, … #> $ object_nb2 <dbl> 2, 2, 4, 4, 2, 2, 2, 2, 5, 5, 2655, 26… #> $ object_nb3 <dbl> 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,… #> $ object_compentropy <dbl> 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,… #> $ object_compmean <dbl> 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,… #> $ object_compslope <dbl> 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,… #> $ object_compm1 <dbl> 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,… #> $ object_compm2 <dbl> 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,… #> $ object_compm3 <dbl> 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,… #> $ object_symetrieh <dbl> 4.472, 4.472, 2.778, 2.778, 3.241, 3.2… #> $ object_symetriev <dbl> 4.700, 4.700, 2.864, 2.864, 3.219, 3.2… #> $ object_symetriehc <dbl> 6, 6, 4, 4, 5, 5, 4, 4, 2, 2, 2, 2, 11… #> $ object_symetrievc <dbl> 6, 6, 4, 4, 5, 5, 4, 4, 2, 2, 2, 2, 11… #> $ object_convperim <dbl> 192, 192, 156, 156, 195, 195, 648, 648… #> $ object_convarea <dbl> 1361, 1361, 1168, 1168, 1407, 1407, 12… #> $ object_fcons <dbl> 27.667, 27.667, 21.134, 21.134, 55.448… #> $ object_thickr <dbl> 2.947, 2.947, 3.000, 3.000, 2.528, 2.5… #> $ object_tag <dbl> 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,… #> $ object_esd <dbl> 452, 452, 420, 420, 650, 650, 6764, 67… #> $ object_elongation <dbl> 3.562500, 3.562500, 1.565217, 1.565217… #> $ object_range <dbl> 38, 38, 40, 40, 43, 43, 201, 201, 212,… #> $ object_meanpos <dbl> -0.5484923, -0.5484923, -0.7094017, -0… #> $ object_centroids <dbl> 4, 4, 4, 4, 4, 4, 0, 0, 4, 4, -16, -16… #> $ object_cv <dbl> 2.104909, 2.104909, 2.538071, 2.538071… #> $ object_sr <dbl> 13.157895, 13.157895, 15.000000, 15.00… #> $ object_perimareaexc <dbl> 0.394387001, 0.394387001, 0.477346278,… #> $ object_feretareaexc <dbl> 0.0945347120, 0.0945347120, 0.07928802… #> $ object_perimferet <dbl> 4.171875, 4.171875, 6.020408, 6.020408… #> $ object_perimmajor <dbl> 4.684211, 4.684211, 8.194444, 8.194444… #> $ object_circex <dbl> 32.10352, 32.10352, 26.50518, 26.50518… #> $ object_cdexc <dbl> 5.908419e-03, 5.908419e-03, 6.472492e-… #> $ process_id <chr> "zooprocess_tara_med_20140607_n_manta_… #> $ process_date <dbl> 20150806, 20150806, 20150806, 20150806… #> $ process_time <dbl> 155400, 155400, 155400, 155400, 155400… #> $ process_img_software_version <chr> "7.03_picheral_cnrs", "7.03_picheral_c… #> $ process_img_resolution <dbl> 2400, 2400, 2400, 2400, 2400, 2400, 24… #> $ process_img_od_grey <dbl> NaN, NaN, NaN, NaN, NaN, NaN, NaN, NaN… #> $ process_img_od_std <dbl> 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,… #> $ process_img_background_img <chr> "20150806_0743_background_large_manual… #> $ process_particle_version <chr> "6.15_2009/10/25_picheral_cnrs", "6.15… #> $ process_particle_threshold <dbl> 243, 243, 243, 243, 243, 243, 243, 243… #> $ process_particle_pixel_size_mm <dbl> 0.0106, 0.0106, 0.0106, 0.0106, 0.0106… #> $ process_particle_min_size_mm <dbl> 0.3, 0.3, 0.3, 0.3, 0.3, 0.3, 0.3, 0.3… #> $ process_particle_max_size_mm <dbl> 100, 100, 100, 100, 100, 100, 100, 100… #> $ process_particle_sep_mask <chr> "include", "include", "include", "incl… #> $ process_particle_bw_ratio <dbl> NaN, NaN, NaN, NaN, NaN, NaN, NaN, NaN… #> $ process_software <chr> "zooprocess_pid_to_ecotaxa_7.24_2017/0… #> $ acq_id <chr> "microplastik_tara_med_20140607_n_mant… #> $ acq_min_mesh <dbl> 200, 200, 200, 200, 200, 200, 200, 200… #> $ acq_max_mesh <dbl> 999999, 999999, 999999, 999999, 999999… #> $ acq_sub_part <dbl> 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,… #> $ acq_sub_method <chr> "motoda", "motoda", "motoda", "motoda"… #> $ acq_hardware <chr> "hydroptic_v3_window7", "hydroptic_v3_… #> $ acq_software <chr> "vuescan9.0.51", "vuescan9.0.51", "vue… #> $ acq_author <chr> "lisa_rouaud_clergues", "lisa_rouaud_c… #> $ acq_imgtype <chr> "zooscan", "zooscan", "zooscan", "zoos… #> $ acq_scan_date <dbl> 20150806, 20150806, 20150806, 20150806… #> $ acq_scan_time <chr> "095000", "095000", "095000", "095000"… #> $ acq_quality <dbl> NaN, NaN, NaN, NaN, NaN, NaN, NaN, NaN… #> $ acq_bitpixel <dbl> 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3,… #> $ acq_greyfrom <dbl> 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2,… #> $ acq_scan_resolution <dbl> 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3,… #> $ acq_rotation <dbl> 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3,… #> $ acq_miror <dbl> 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,… #> $ acq_xsize <dbl> 28776, 28776, 28776, 28776, 28776, 287… #> $ acq_ysize <dbl> 50360, 50360, 50360, 50360, 50360, 503… #> $ acq_xoffset <dbl> 6248, 6248, 6248, 6248, 6248, 6248, 62… #> $ acq_yoffset <dbl> 2935, 2935, 2935, 2935, 2935, 2935, 29… #> $ acq_lut_color_balance <chr> "manual", "manual", "manual", "manual"… #> $ acq_lut_filter <chr> "no", "no", "no", "no", "no", "no", "n… #> $ acq_lut_min <dbl> 738, 738, 738, 738, 738, 738, 738, 738… #> $ acq_lut_max <dbl> 61645, 61645, 61645, 61645, 61645, 616… #> $ acq_lut_odrange <dbl> 1.8, 1.8, 1.8, 1.8, 1.8, 1.8, 1.8, 1.8… #> $ acq_lut_ratio <dbl> 1.15, 1.15, 1.15, 1.15, 1.15, 1.15, 1.… #> $ acq_lut_16b_median <dbl> 53604.55, 53604.55, 53604.55, 53604.55… #> $ acq_instrument <chr> "zooscan", "zooscan", "zooscan", "zoos… #> $ sample_id <chr> "tara_med_20140607_n_manta_016", "tara… #> $ sample_scan_operator <chr> "lisa_rouaud_clergues", "lisa_rouaud_c… #> $ sample_ship <chr> "tara", "tara", "tara", "tara", "tara"… #> $ sample_program <chr> "tara_med_2014", "tara_med_2014", "tar… #> $ sample_stationid <dbl> NaN, NaN, NaN, NaN, NaN, NaN, NaN, NaN… #> $ sample_bottomdepth <dbl> 99999, 99999, 99999, 99999, 99999, 999… #> $ sample_ctdrosettefilename <dbl> NaN, NaN, NaN, NaN, NaN, NaN, NaN, NaN… #> $ sample_other_ref <dbl> NaN, NaN, NaN, NaN, NaN, NaN, NaN, NaN… #> $ sample_tow_nb <dbl> 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,… #> $ sample_tow_type <dbl> 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2,… #> $ sample_net_type <chr> "manta", "manta", "manta", "manta", "m… #> $ sample_net_mesh <dbl> 335, 335, 335, 335, 335, 335, 335, 335… #> $ sample_net_surf <dbl> 0.0976, 0.0976, 0.0976, 0.0976, 0.0976… #> $ sample_zmax <dbl> 0.16, 0.16, 0.16, 0.16, 0.16, 0.16, 0.… #> $ sample_zmin <dbl> 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,… #> $ sample_tot_vol <dbl> 749.5192, 749.5192, 749.5192, 749.5192… #> $ sample_comment <chr> "flacons_non_scannes_tara2014061/oov90… #> $ sample_tot_vol_qc <dbl> 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,… #> $ sample_depth_qc <dbl> 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,… #> $ sample_sample_qc <dbl> 1111, 1111, 1111, 1111, 1111, 1111, 11… #> $ sample_barcode <chr> "ifremer", "ifremer", "ifremer", "ifre… #> $ sample_duration <dbl> 60, 60, 60, 60, 60, 60, 60, 60, 60, 60… #> $ sample_ship_speed <dbl> 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3,… #> $ sample_cable_length <dbl> 99999, 99999, 99999, 99999, 99999, 999… #> $ sample_cable_angle <dbl> 99999, 99999, 99999, 99999, 99999, 999… #> $ sample_cable_speed <dbl> 99999, 99999, 99999, 99999, 99999, 999… #> $ sample_nb_jar <dbl> NaN, NaN, NaN, NaN, NaN, NaN, NaN, NaN… #> $ sample_dataportal_descriptor <chr> "<bioimagingdescriptors><bioimagingdes… #> $ sample_open <dbl> NaN, NaN, NaN, NaN, NaN, NaN, NaN, NaN…