Function reference • ecotaxar

All functions
`ancestors()`	Get the ids of all ancestors of some taxa
`api_define_object_set()`	Define a set of objects by filtering according to some criteria
`api_handle_response()`	Handle an API response
`api_login()`	Log in EcoTaxa
`api_object()`	Get information about a single object
`api_sample()`	Get information about a single sample
`api_taxon()`	Get information about a single taxon
`api_token()`	Read your EcoTaxa token
`api_token_path()`	Get the path to your cached EcoTaxa token
`api_update_object_set()`	Batch update metadata of objects
`api_update_sample_set()`	Batch update metadata of samples
`api_url()`	Get the base URL of EcoTaxa's API
`api_user()`	Get information about a single user, by id
`api_get_user_preference()` `api_set_user_preference()` `api_del_user_preference()`	Deal with user preferences
`api_users()`	List EcoTaxa users
`api_users_me()`	Get information about the currently authenticated user (i.e. you)
`api_users_search()`	Search for users, by name
`as.taxo()` `is.taxo()` `as.list(<taxo>)` `as.Node(<taxo>)`	Coerce a taxonomy data.frame to various formats
`children()`	Get ids of the children of some taxa
`db_connect_ecotaxa()` `db_disconnect_ecotaxa()` `src_ecotaxa()` `db_disconnect()`	Database connection to EcoTaxa
`db_extract()`	Get objects and associated metadata
`descendants()`	Get ids of descendants of some taxa
`extract_taxo()`	Extract a subset of the taxonomy for a set of ids
`is_leaf()`	Tests whether taxa are leaves in a taxonomic tree
`lineage()`	Get the full lineage of a taxon
`map_names()` `parse_mapping()`	Parse a mapping specification
`parent()` `parents()`	Get id of the parent of some taxa
`read_ecotaxa_tsv()` `read_etx()`	Read tsv file from EcoTaxa
`remove_empty_cols()`	Remove empty columns from a data.frame
`taxo`	Minimal, fake taxonomy table
`taxo_id()`	Get the ids of taxa from their names
`taxo_name()`	Get the names of taxa from their ids
`tbl_ecotaxa()`	Connect to common EcoTaxa tables

Reference

All functions